PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2030_iso_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 144aa    MW: 15609.2 Da    PI: 10.6157
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2030_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05117140123
                                         EEETTTTEEESSHHHHHHHHHH.T CS
                             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                         ++C+ C++sF +   L++H +  H
  cra_locus_2030_iso_5_len_776_ver_3 117 HTCKSCSRSFGSENALESHKKAkH 140
                                         79*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.05E-5109139No hitNo description
PROSITE profilePS5015712.3117144IPR007087Zinc finger, C2H2
PfamPF139121.2E-6117140IPR007087Zinc finger, C2H2
PROSITE patternPS000280119140IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
XKVETGKKRA ADSAIKTPVP DKKAKVATPQ KTGEFPYYTX LDNFPDFYLL VRRGKVTCFX  60
ACRVLFTSFL IGLLMYLNIA DLKKGGVHIA TPHPSKQAGK TPGNKNQQTP KSGGGSHTCK  120
SCSRSFGSEN ALESHKKAKH SGGK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612087.17e-33PREDICTED: histone deacetylase HDT1-like
TrEMBLA0A068V4672e-33A0A068V467_COFCA; Uncharacterized protein
STRINGSolyc10g085560.1.14e-31(Solanum lycopersicum)